Archana Malhotra
Computational Biologist
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shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
By BioStar 1892 days agogithub.com - Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take...Project Fellow at Indian Institute of Chemical Biology (IICB)
Advertisement No. : R&C/CD/427/2015 ,Vacancy Code: 4271501 Project Fellow Bioinformatics recruitment in Indian Institute of Chemical Biology (IICB) purely temporary Name of the Project: "Genomics and Informatics Solutions for...
Run miniasm assembler on nanopore reads !
Last updated 3003 days ago by Jit Comments (5)Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream...2 positions on the evolutionary analysis of biological sequences in Montpellier - France
The Methods and Algorithms for Bioinformatics (MAB) team at the LIRMM (computer science, robotics and microelectronics laboratory at the CNRS & University of Montpellier, France) is looking for talented individuals to fill two postdoctoral...TAREAN: A computational tool for identification and characterization of satellite DNA from...
By Surabhi Chaudhary 2855 days agobitbucket.org - TAndem REpeat ANalyzer -TAREAN – is a computational pipeline for unsupervised identification of satellite repeats from unassembled sequence reads. The pipeline uses low-pass whole genome sequence reads and performs their...SRF/JRF Bioinformatics at IARI
Agricultural Knowledge Management Unit ICAR-INDIAN AGRICULTURAL RESEARCH INSTITUTE L.B.S Building, Pusa Campus, New Delhi-110012 Walk-in-Interview: 18th December 2015 DBT funded project: Distributed Information Centre under BTISnet...npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
By Shruti Paniwala 2828 days agojapsa.readthedocs.io - npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbial datasets. In real-time mode, it can be integrated with simple...RA Bioinformatics at NIPGR
Applications are invited from suitable candidates for filling up the purely temporary positions of one Research Associate (RA) and one Junior Research Fellow (JRF) in the DBT Part-B Sub-project-1&2 entitled Transcriptome and epigenome diversity...SimLoRD: A read simulator for third generation sequencing reads
By Aaryan Lokwani 2756 days agobitbucket.org - SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences SMRT error model. Reads are simulated from both strands of a provided or randomly generated reference sequence. The reference...Project Assistant BioInformatics
Project Assistant BioInformatics Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg), MSc(Bio-Informatics), BE/B.Tech Location : Pune Last Date : 16 Nov 2015 Hiring Process : Face to Face Interview No. Bio/NCIM/3...
