Abhimanyu Singh
A bioinformatics beginner
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GMASS: a novel measure for genomeassembly structural similarity
By Abhimanyu Singh 2522 days agobioinfo.konkuk.ac.kr - The GMASS score is a novel measure for representing structural similarity between two assemblies. It will contribute to the understanding of assembly output and developing de novo...Research Associate and Junior Research Fellow at North-Eastern Hill University - Tura, Meghalaya
Research Associate and Junior Research Fellow North-Eastern Hill University - Tura, Meghalaya ₹18,000 a month Applications are invited for the post of Research Associate and JRF in the DBT sponsored Bioinformatics Infrastructure Facility (BIF),...NextDenovo: string graph-based de novo assembler for TGS long reads
By Jit 2256 days agogithub.com - NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After assembly, the per-base error rate...HybPiper
By Jit 3413 days agogithub.com - HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts that wrap and connect bioinformatics tools in order...MEC: Contig Misassembly Correction
By BioStar 2225 days agogithub.com - MEC, to identify and correct misassemblies in contigs. Firstly, MEC takes fragment coverage as the feature to detect the candidate misassemblies. Then, it can distinguish a large number of false positives from the candidate misassemblies based on...R Graphical Cookbook by Winston Chang
By Abhimanyu Singh 3413 days agoR Graphical Cookbook by Winston Chang A very nice book by Winston Chang for R ethusiast. The R code presented in these pages is the R code actually used to produce the Figures in the book. There will be differences compared to the code chunks shown...SvABA: Structural variation and indel detection by local assembly
By Jit 2191 days agogithub.com - SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph Assembler) by Jared Simpson, and BWA-MEM by Heng Li....Statistics and probability
By Jit 3409 days agowww.khanacademy.org - Topics Displaying and describing data Modeling distributions of data Describing relationships in quantitative data Designing studies Probability Random variables Sampling distributions Confidence intervals (one sample) Significance tests...RefKA: A fast and efficient long-read genome assembly approach for large and complex genomes
By Rahul Nayak 2139 days agogithub.com - RefKA, a reference-based approach for long read genome assembly. This approach relies on breaking up a closely related reference genome into bins, aligning k-mers unique to each bin with PacBio reads, and then assembling each bin in parallel...Bioistats Online course
By Abhimanyu Singh 3407 days agoonlinecourses.science.psu.edu - One of our primary focuses will be to develop an understanding of the various ways in which we can assign a probability to some chance event. We'll also learn the fundamental properties of probability, investigate how probability behaves,...
