Abhimanyu Singh
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GenomeMapper: Simultaneous alignment of short reads against multiple genomes
By Jit 2942 days ago1001genomes.org - GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align against multiple genomes simulanteously or against a single...RA Bioinformatics at National Bureau of Fish Genetic Resources
F.No. 1(16)/2016-Admn. (DBT-BBSRC Project) Research Associate /JRF Biotechnology Job vacancies in National Bureau of Fish Genetic Resources on contract basis Research Associate /01 Post Essential: Ph.D. in Bioinformatics or 03 years research...AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
By Jit 2868 days agowww.healthcare.uiowa.edu - Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser...DBT – Bioinformatics Industrial Training Programme (BIITP) 2016 – 17
By Jit 3609 days agoLast date for submitting the online application has been extended till 5th August 2016.rHAT: a seed-and-extension-based noisy long read alignment tool
By Abhimanyu Singh 2821 days agogithub.com - rHAT is a seed-and-extension-based noisy long read alignment tool. It is suitable for aligning 3rd generation sequencing reads which are in large read length with relatively high error rate, especially Pacbio's Single Molecule Read-time (SMRT)...Bioinformatics Technical Position at CDAC Pune - India
CDAC Pune Recruitment 2016 – Apply Online for Technical Positions: Department of Information Technology under the Ministry of Communications and Information Technology, Government of India, Centre for Development of Advanced Computing (C-DAC), Pune...Shouji: a fast and efficient pre-alignment filter for sequence alignment
By Jit 2414 days agogithub.com - The ability to generate massive amounts of sequencing data continues to overwhelm the processing capacity of existing algorithms and compute infrastructures. In this work, we explore the use of hardware/software co-design and hardware acceleration...Research Project at IIT, Madras
Two project positions are available to work on (i) molecular modeling and molecular dynamics simulations and (ii) development of bioinformatics databases and tools at Protein Bioinformatics Lab, Department of Biotechnology, IIT Madras. Duration :...Caretta – A multiple protein structure alignment and feature extraction suite
By Rahul Nayak 2004 days agowww.bioinformatics.nl - Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments...valet
By Jit 3552 days agowww.cbcb.umd.edu - VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembly (e.g., mate-pairs are aligned at the correct distance from each other in the...
