Abhimanyu Singh
A bioinformatics beginner
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The Genome 10K Project
By Jit 3772 days agohttps://genome10k.soe.ucsc.edu The Genome 10K project aims to assemble a genomic zoo—a collection of DNA sequences representing the genomes of 10,000 vertebrate species, approximately one for every vertebrate genus. The trajectory of cost reduction...GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
By Rahul Agarwal 3430 days ago Comments (1)github.com - GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presents a significant...Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
By Jit 2742 days agosourceforge.net - Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce genomic, metagenomic, transcriptomic, metatranscriptomic,...Jabba: Hybrid Error Correction for Long Sequencing Reads
By Jit 2516 days agogithub.com - Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as input a concatenated de Bruijn graph and a set of sequences: the de Bruijn graph...Genobuntu: Package for Next Generation Sequencing and Genome Assembly
By BioStar 1651 days agosourceforge.net - Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.Commonly used biological software and...Compressive Genomics
Started by Rahul Agarwal 4124 days agoThe key to finding a solution is to notice that most genomicsequences differ by very little. It may well be that the number of complete genome sequences being stored is increasing rapidly, but the actual amount of new data is very small. In...Precision Medicine
By Rahul Agarwal 4110 days agowww.cbsnews.com - Coupling established clinical–pathological indexes with state-of-the-art molecular profiling to create diagnostic, prognostic, and therapeutic strategies precisely tailored to each patient's requirements — hence the term “Precision...Bioinformatics market in India
By Rahul Agarwal 4112 days agowww.kenresearch.com - Key Topics Covered in the Report: The market size of the Indian Bioinformatics Industry , FY’2007-FY’2013 Market segmentation of India bioinformatics industry by application by sectors, FY’2007-FY’2013 Market...Introduction of Epigenomics
By Rahul Agarwal 4068 days agowww.genome.gov - What is the epigenome? What does the epigenome do? What makes up the epigenome? Is the epigenome inherited? What is imprinting? Can the epigenome change? What makes the epigenome change? How do changes in the epigenome contribute to...
