Reshma Khatun
Bioinformatician ...
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Dumontier Lab
Our research aims to better understand how living systems respond to chemical agents. A key aspect of our approach involves using computational frameworks that are powered by formal (i.e. machine understandable) semantics to make effectively use of...WGS Celera Assembler version 8.3rc2
By Jit 3258 days agowgs-assembler.sourceforge.net - These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version of the software. The distribution is usable on most Unix-like platforms,...IBL laboratory
The IBL laboratory focuses on the multi-disciplinary analyses of the global responses of model microorganisms, cyanobacteria (mainly Synechocystis PCC6803) and yeasts (mainly Saccharomyces cerevisae) to environmental stresses triggered by oxidative...Metagenomics assembly workshop !!
By Jit 3250 days agodenbi-metagenomics-workshop.readthedocs.io - Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and binning. The Tutorial Data Set FastQC Quality Control Assembly Velvet Assembly MEGAHIT...The Upton (VBRC) lab
This Bioinformatics Resource (Virology.ca, the Canadian half of the now defunct VBRC) focuses on large DNA viruses: Poxviruses African Swine Fever Viruses Iridoviruses Baculoviruses Research Area Custom searches of the viral...Welch Lab
They are based in the Department of Genetics at the University of Cambridge. The research covers diverse areas of evolutionary biology, and molecular evolution in particular. It combines theoretical and empirical approaches, and particularly...Fastq format
By Jit 3235 days agoen.wikipedia.org - FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence letter and quality score are each encoded with a...List of popular bioinformatics software/tools
By Jitendra Narayan 4622 days ago Comments (28)samtools.sourceforge.net - In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.Bacterial genome assembly !!
By Jit 3233 days agobioinformatics.uconn.edu - This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of bacterial sequence data. The bacterial sample used in this tutorial will be...Computational Proteomics : Lets remember the basics
By Jitendra Narayan 4606 days ago Comments (5)Basics of computational proteomics
