Points: 188
Radha Agarkar
Brief description:
A Bioinformatician
Location:
Maharashtra, India
Interests:
Skills:
About me
A bioinformatician from Maharashtra, India
- Radha Agarkar is now a friend with BioHack
- Radha Agarkar created a new bio-script Check os version in Linux !
- Radha Agarkar commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites
- Radha Agarkar posted to the wire
- Radha Agarkar commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites
Julia Programming Language, a Python and R rival
By Radha Agarkar 2750 days agoJulia Programming Language – A Real Python & R Alternative
Filtlong: quality filtering tool for long reads
By Radha Agarkar 2122 days agogithub.com - Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the...EXCAVATOR: detecting copy number variants from whole-exome sequencing data
By Radha Agarkar 2617 days agosourceforge.net - EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combines a three-step normalization procedure with a novel heterogeneous hidden Markov model algorithm and a calling method that classifies...MinION_GC: An R script to do some QC on MinION data
By Radha Agarkar 3014 days agogithub.com - Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file. So it's a lot quicker than most other things out...Multi-metagenome assembly
By Radha Agarkar 3289 days agogithub.com - This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomesMads...
Question: Any good bioinformatics suggestions !
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
- By Radha Agarkar 2618 days ago
- By Radha Agarkar 3014 days ago
- By Radha Agarkar 3180 days agoUnderstanding BitScore https:/
/ www.ctu.edu.vn/ ~dvxe/ Bioinformatic%20course/ lectures/ scores.pdf #Blast #Bit #BitScore - By Radha Agarkar 3409 days agoBioinformatics scientist at NIAB http:/
/ www.niab.org.in/ Notifications/ Advt_3_2016/ Notification_3_2016.pdf #Scientist #Nabi #India
Sample BINC question paper 2016 - part2
By Radha Agarkar 3584 days agoDownload the sample question paper for BINC 2016 - paer IISample BINC question paper 2016 - part1
By Radha Agarkar 3584 days agoPlease download the sample bioinformatics question paper for BINC 2016
Tools for bacterial whole genome annotation
Last updated 3001 days ago by Radha AgarkarRAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per genome but I think this is the best way to get a high quality annotation...-
Tools for Searching Repeats And Palindromic Sequences
Last updated 2881 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later... -
SLURM basics !
Last updated 3584 days ago by Radha Agarkar Comments (1)SLURM is a queue management system and stands for Simple Linux Utility for Resource Management. SLURM was developed at the Lawrence Livermore National Lab and currently runs some of the largest compute clusters in the world. SLURM is similar in...
