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List of Bioinformatics Software Tools for Next Generation Sequencing
Last updated 3089 days ago by JitCommercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological Interpretation, etc. Supports workflows “one can import the sample data in...Program Officer, Bioinformatics at Jhpiego
Jhpiego is a non-profit global health leader and Johns Hopkins University affiliate that is saving lives, improving health, and transforming futures. We partner with governments, health experts, and local communities to build the skills and systems...Easyfig
By Poonam Mahapatra 3108 days agoeasyfig.sourceforge.net - Easyfig has moved to github, for newer releases of Easyfig please visit our new webpage - https://mjsull.github.io/Easyfig. Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use...Research Fellow Bioinformatics
Research Fellow Bioinformatics Eligibility : BSc(Bio-Tech), MSc(Bio-Tech) Location : Ludhiana Last Date : 19 Apr 2016 Hiring Process : Walk - In Punjab Agricultural University Research Fellow Bioinformatics job opportunities in Punjab...RACA: Reference-Assisted Chromosome Assembly
By Priya Singh 3131 days ago Comments (1)bioen-compbio.bioen.illinois.edu - Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome information and paired-end...REAPR: a universal tool for genome assembly evaluation
By Jitendra Prajapati 3131 days ago Comments (1)genomebiology.biomedcentral.com - REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and...Trimmomatic: A flexible read trimming tool for Illumina NGS data
By Jit 3122 days agowww.usadellab.org - Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_paired.fq.gz output_reverse_unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10...Desai Lab
Evolutionary Dynamics and Population Genetics Natural selection and other evolutionary forces lead to particular patterns of evolutionary dynamics, and they leave characteristic signatures on the genetic variation within populations. We use a...MEDEA: Comparative Genomic Visualization with Adobe Flash
By Jit 3111 days agowww.broadinstitute.org - As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human visual system to detect trends and spot outliers is necessary in such...RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
By Abhi 3110 days agohttp://rast.nmpdr.org/ - The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes...
