Abhimanyu Singh
A bioinformatics beginner
Our Sponsors
Related items
Genomic Open-source Breeding informatics initiative
By BioStar 1417 days agocbsugobii05.biohpc.cornell.edu - To build open-source genomic data management and analysis tools to enable breeders to implement genomic and marker-assisted selection as part of their routine breeding programs. To transform breeding by connecting diverse data with precision...Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
By Jit 2558 days agosourceforge.net - Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the...EuGI: a novel resource for studying genomic islands to facilitate horizontal gene transfer...
By Surabhi Chaudhary 2388 days agobmcgenomics.biomedcentral.com - SWGIS v2.0 along with the EuGI database, which houses GIs identified in 66 different eukaryotic species, and the EuGI web-resource, provide the first comprehensive resource for studying HGT in...minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
By Jit 2349 days agogithub.com - git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam # create an index first and then map ./minimap2 -d MT-human.mmi...UPhO: Scripts for homology and orthology assessment from genomic sequences.
By BioStar 2141 days agogithub.com - UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependencies. Type UPhO.py -h for help. The only input requierement for UPhO...Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map
By Jit 1719 days agogithub.com - A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo:...GenoFig: a user-friendly application for the visualization and comparison of genomic regions
By BioStar 110 days agoforgemia.inra.fr - Tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It is an independent recoding of Easyfig 2 initially developped by at the S. Beatson Lab [https://mjsull.github.io/Easyfig/] Download the GenoFig...Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
By Jit 2512 days agowww.sanger.ac.uk - Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif...Postdoc position at Kiel University, Germany
In the Genomic Microbiology Group of Prof. Tal Dagan at the Institute of Microbiology at Kiel University, Germany, a Postdoc position (m/w/d) in the field of computational evolutionary microbiology is available for an initially limited...Vvek's Lab
Broad Area of Research: RNA biology (microRNA, lncRNA), Stem cells, Functional genomics, Epigenomics and Cancer RNAs, especially non-coding RNAs (such as microRNA, long ncRNAs) are recently identified to be very abundant in mammalian organisms...
