Abhimanyu Singh
A bioinformatics beginner
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Liftoff: an accurate tool that maps annotations in GFF or GTF between assemblies
By Jit 1738 days agogithub.com - Liftoff, an accurate tool that maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a...n50PlottingTools
By Jit 3342 days agogithub.com - Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingToolsMafTools
By Jit 2969 days agogithub.com - maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project...karyoploteR: plot whole genomes with arbitrary data
By Abhimanyu Singh 2618 days agobernatgel.github.io - karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by the R base graphics system and does not depend on other graphics packages. The aim of karyoploteR...shinyCircos: an R/Shiny application for interactive creation of Circos plot
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By Neel 800 days agopangenome.github.io - Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences from this reference are hard to observe and describe in a coherent way. Variation...Bioinformatics JRF vacancy at ICGEB, New Delhi
Junior Research Fellow for a DBT sponsored project entitled "Computational and experimental characterization of stage specific arginine methylation in P. falciparum proteome". Candidates should have a 1st class MSc/MTech/BTech degree in...SRF/ Project Assistant Bioinformatics at NIRRH
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