Jit
Enthusiast computational biologist with business dream !!!
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gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
By Rahul Nayak 2235 days agogithub.com - gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and...10 NGS services companies around the globe !
By BioStar 1931 days agoAccording to the research report published, the top companies in NGS Services Market have new service launches, acquisitions, collaborations, partnerships, and also have expansions taken place in the NGS services space.Understanding HiFi Reads !
By Rahul Nayak 1444 days agopacb.com - While little public data is available for either of the new synthetic long read approaches, Illumina showed an example comparison earlier this year at the Festival of Genomics & Biodata conference (FoG 2022). In the IGV screenshot...Long read assembly workshop !
By Rahul Nayak 2711 days ago Comments (4)sepsis-omics.github.io - This is a tutorial for a workshop on long-read (PacBio) genome assembly. It demonstrates how to use long PacBio sequencing reads to assemble a bacterial genome, and includes additional steps for circularising, trimming, finding plasmids, and...Kevler: Reference-free variant discovery in large eukaryotic genomes
By Jit 2231 days agogithub.com - Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs),...HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
By Jit 3014 days agonservant.github.io - HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main Hi-C protocols, including digestion protocols as well as protocols that do not...
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4616 days agoBarber pole worm , sheep pathogen sequenced !!!
By Rahul Agarwal 4568 days agoResearchers have uncovered essential information in the fight against drug resistance in worms.DNA tale of 3 to 4 years old Serbia boy
By Rahul Agarwal 4484 days agoAncient DNA study of Serbian boy!!!
