Rahul Agarwal
I'm a Bioinformatician and Programmer
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Scientist positions @ CSIR-Institute of Genomics & Integrative Biology (IGIB)
CSIR-Institute of Genomics & Integrative Biology (IGIB) is a premier Institute of Council of Scientific and Industrial Research (CSIR), engaged in research of national importance in the areas of genomics, molecular medicine, bioinformatics and...Understanding RNA-Seq Normalization Methods: TPM vs. FPKM vs. CPM
By Neel 453 days agoChoosing the right normalization method depends on the specific objectives of your RNA-Seq analysis. TPM’s proportionality and robustness make it the preferred choice for most applications, while CPM serves well for differential expression...phyloXML: XML for evolutionary biology and comparative genomics
By Jit 3022 days agohttp://www.phyloxml.org/ - phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch...Dynamic chromosome breakpoints !!!
By Jitendra Narayan 4225 days agoDuring recombination, the precise breakage of each strand, exchange between the strands, and sealing of the resulting recombined molecules happens. The “chromosomal breakpoints” refers to these places where they break.PSPairwise Sequentially Markovian Coalescent (PSMC) model
By Jit 2881 days agogithub.com - Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) modelNucleus: Python and C++ code for reading and writing genomics data.
By Jit 2227 days agogithub.com - Nucleus is a library of Python and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucleus enables painless integration with the TensorFlow machine learning framework,...Sibelia: A comparative genomics tool
By BioStar 2025 days ago Comments (1)github.com - Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the...Project Associate-I | Project Associate-II | Senior Project Associate @ IGIB
Experience in Next Generation Sequencing (NGS) application and interest in Genomics/ Clinical / Translational Applications. OR Good computational programming skills and deep interest in working on interface of Genomics and Clinical application....LoVis4u: Locus Visualisation tool for comparative genomics
By LEGE 538 days agogithub.com - Description LoVis4u is a bioinformatics tool for Loci Visualisation. LoVis4u, a command-line tool and Python API designed for highly customizable and fast visualisation of multiple genomic loci. LoVis4u generates vector images in...
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4618 days ago
