Neel
Bioinformatics Beginner
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ngs-bits - Short-read sequencing tools
By Neel 1804 days agogithub.com - Binaries of ngs-bits are available via Bioconda. Alternatively, ngs-bits can be built from sources: Binaries for Linux/macOS From sources for Linux/macOS From sources for WindowsScientist Bioinformatics Positions
Bioinformatics-Multi_Omics_Integration https://www.researchgate.net/job/939073_Senior_Scientist_Bioinformatics-Multi_Omics_Integration Senior_Scientist_Bioinformatics-Transcriptomics_Analysis...Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome...
By Jit 1671 days agogithub.com - Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a...1mb long DNA with Nanopore technology
By Jit 2562 days agoLongest read of 1mb achievements with NanoporeFlye: Fast and accurate de novo assembler for single molecule sequencing reads
By BioJoker 2093 days agogithub.com - Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The...MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
By Jit 1797 days agogithub.com - MitoZ is a Python3-based toolkit which aims to automatically filter pair-end raw data (fastq files), assemble genome, search for mitogenome sequences from the genome assembly result, annotate mitogenome (genbank file as result), and mitogenome...How to sequence the human genome - Mark J. Kiel
By Rahul Nayak 3861 days agoView full lesson: http://ed.ted.com/lessons/how-to-sequence-the-human-genome-mark-j-kiel Your genome, every human's genome, consists of a unique DNA sequence of A's, T's, C's and G's that tell your cells how to operate. Thanks to technological...Scaffolding of a bacterial genome using MinION nanopore sequencing
By Rahul Agarwal 3458 days agowww.nature.com - Second generation sequencing has revolutionized genomic studies. However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with typical sequencers, so the genomic order of several generated contigs cannot...Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
By Strand 2989 days agoLive Webinar on RNA-Seq Data Analysis Abstract: Strand NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes Transcriptome / Genome alignment, Differential expression analysis with Statistical...GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
By Abhimanyu Singh 2773 days agogithub.com - GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed-integer programming formulation of the contig scaffolding problem, which...
