BOL

broadinstitute.github.io - Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs repository. See especially the SAM specification and the VCF...

www.broadinstitute.org - The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single program to generate a complete...

www.igenbio.com - ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes.  Using Igenbio's proprietary algorithms, and the most comprehensive genomic database integrated with...

theory.stanford.edu - Moss (for a Measure Of Software Similarity) is an automatic system for determining the similarity of programs. To date, the main application of Moss has been in detecting plagiarism in programming classes. Since its development in 1994, Moss has...

sourceforge.net - Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_quality. Too many transcript assemblies is much better than too few. It allows one then to apply biological criteria to pick out the best ones. Don't...

tjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM perusio/nginx-munin - A set of plugins for monitoring nginx with Munin openresty/lua-resty-memcached - Lua memcached client driver for the ngx_lua based on the...

www.bioapp.org - EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On the basis of EWAS1.0, we have added more distinctive features. EWAS2.0 software was developed based on our “population...

hub.docker.com - GPSRdocker (http://webs.iiitd.edu.in/gpsrdocker/) is  Presently it contain software developed at G. P. S. Raghava's group (http://webs.iiitd.edu.in/raghava/ ). The programs and the package are free software for academic users. Permission...

github.com - OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale optical mapping profiles. OMTools includes modules for visualization (OMView), data processing and simulation. These modules together form...

http://www.ub.edu/dnasp/ - DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several loci (a Multiple-MSA data, such as formats generated by some...