Rahul Agarwal
I'm a Bioinformatician and Programmer
Our Sponsors
Related items
McClintock: Meta-pipeline to identify transposable element insertions using next generation...
By BioStar 1957 days agogithub.com - an integrated bioinformatics pipeline for the detection of TE insertions in whole-genome shotgun data, called McClintock (https://github.com/bergmanlab/mcclintock), which automatically runs and standardizes output for multiple TE detection methods....Figeno: Tool for plotting sequencing data along genomic coordinates.
By LEGE 536 days agogithub.com - Tool for plotting sequencing data along genomic coordinates. FIGENO is a FIGure GENerator for GENOmics With figeno, you can plot various types of sequencing data along genomic coordinates. Video...Nemo – A stochastic, individual-base, genetically explicit simulation platform
By Jit 3443 days agonemo2.sourceforge.net - A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for neutral markers (e.g. SNPs) and loci under selection (QTLs, deleterious mutations, DMIs) can now be specified explicitly, or set at random....jobTree based python wrapper to run the genome simulation tool suite Evolver
By Jit 3010 days agogithub.com - evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC also automatically creates statistical summaries of the simulation...Reference Sequence Resource!
By LEGE 1633 days agowww.encodeproject.org - The ENCODE project uses Reference Genomes from NCBI or UCSC to provide a consistent framework for mapping high-throughput sequencing data. In general, ENCODE data are mapped consistently to 2 human (GRCH38, hg19) and 2 mouse...Public Databases for Bioinformatics !
By Jit 1810 days agomitra.stanford.edu - https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server: dhara: Synology 3614 Storage Appliance 4 Core Xeon 108TB disk storage 10Gb ethernet to SCG3 Access atx: dhara:5000 Has btsync server (try it - its much...chromoMap-An R package for Interactive visualization and mapping of human chromosomes
By Rahul Nayak 2811 days ago Comments (1)An R package for Interactive visualization and mapping of human chromosomesPLAR: Pipeline for lncRNA annotation from RNA-seq data
By Abhi 1520 days agowww.weizmann.ac.il - Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs...Why neuroinformatics?
By Archana Malhotra 4491 days agoWhy does neuroscience need neuroinformatics? Watch this 3 min video to find out! The mission of the International Neuroinformatics Coordinating Facility (INCF) is to facilitate the work of neuroscientists around the world, and to catalyze and...
