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Next generation sequencing in R or bioconductor environment
Last updated 3828 days ago by John Parker Comments (3)There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an advanced environment for efficient sequence management and analysis in R. It...Visiting Scientist - Computational Genomics
ICRISAT is a non-profit, non-political organization that conducts agricultural research for development in Asia and sub-Saharan Africa with a wide array of partners throughout the world. ICRISAT and its partners help empower those living in the...ShendureLab
The mission of our lab is to develop and apply new technologies and methods for genetics, genomics and molecular biology. Most of our work exploits next-generation DNA sequencing which is effectively emerging as a broadly enabling microscope for the...
Ten recommendations for creating usable bioinformatics command line software
By RAJESH DETROJA 3822 days agowww.gigasciencejournal.com - Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present ten...CBS Comparative Microbial Genomics group - BioTools download page
By Neel 2286 days agowww.cbs.dtu.dk - he CMG-biotools system presents a stand-alone interface for comparative microbial genomics. The package is a customized operating system, based on Xubuntu 10.10, available through the open source Ubuntu project. The system can be installed on a...Bioinformatics algorithms tutorials
By John Parker 3806 days agowww.homolog.us - Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genome and RNAseq Assembly - a Hands on...Synteny and Rearrangement Identifier (SyRI)
By Jit 1664 days agoschneebergerlab.github.io - SyRI is a comprehensive tool for predicting genomic differences between related genomes using whole-genome assemblies (WGA). The assemblies are aligned using whole-genome alignment tools, and these alignments are then used as input to SyRI. SyRI...Workshop On Molecular Modeling and Dynamics Simulation Analyses
Workshop On Molecular Modeling and Dynamics Simulation Analyses August1-2, 2014 Organised By Centre of Excellence in Bioinformatics Bioinformatics Infrastructure Facility Department of Biochemistry University of...Postdoc in Genomics of Pipefishes and Seahorses at NSF-funded postdoctoral project in Adam Jones'...
An NSF-funded postdoctoral position is available in Adam Jones' Lab at the University of Idaho to study the evolution and development of the male's brood pouch in syngnathid fishes (seahorses, pipefishes and seadragons). The project is being...Orione – a web-based framework for NGS analysis in microbiology
By Martin Jones 3777 days agohttp://orione.crs4.it/ - End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that...
