The Brent Lab is developing and applying computational methods for mapping gene regulation networks, modeling them quantitatively, and engineering new behaviors into them.
Ph.D. Fellowship (18,000 euro/pa, plus tuition fees at the EU students rate) is available for four years to work on development of Bioinformatics resources for the analysis and visualization of ribosome profiling data. Ribosome profiling (ribo-seq)...
To remove all line ends (\n) from a Unix text file:
sed ':a;N;$!ba;s/\n//g' filename.txt > newfilename_oneline.txt
To get average for a column of numbers (here the second column $2):
awk '{ sum += $2; n++ } END { if (n > 0) print sum / n;...
The 3rd Annual Next Generation Sequencing Asia Congress is to be held on the 22nd and 23rd of October 2013 in Singapore. Over the 2 days, the conference will provide an overview of the current options of next-generation sequencing platforms,...
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of interaction sites on protein surface and tools for predicting the structure of the...
Here is a small tutorial on how to make best use of multiple processors for bioinformatics analysis. One best way is using perl threads and forks. Knowing how these threads and forks work is very important before implementing them. Getting to know...
Key Responsibilities
- Process and analyse metabolomic, transcriptional, genomics, proteomics
and any other kind of biological data.
- Interpret the data in the context of relevant biological literature to generate
actionable insights.
-...
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at the Tomato Disease Workshop 2010. For more information, please...