BOL

Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa #fasta #otherthanATGC #replace #sed #Linux #illegal

export PERL5LIB=/home/foobar/code #SetPath #Perl

Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

#Scientific #converter https://www.rapidtables.com/convert/number/scientific-notation-converter.html

List of bioinformatics companies worldwide http://grouthbio.com/Genome_Software_Service.php #Companies #Worldwide #Bioinformatics #List #Name

Squid – a simple bioinformatics grid http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1190159/?tool=pubmed