2199 days ago
Comment on "Run miniasm assembler on nanopore reads !"
Must read paper https://genome.cshlp.org/content/27/5/737.full2229 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...20170918_oly_pacbio_minimap_mappings.paf \ 20170918_oly_pacbio_miniasm_assembly.gfa \ 20170918_oly_pacbio_racon1_consensus.fasta from Sam’s Notebook http://ift.tt/2fKBPUN2229 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
We now need to install the poRe dependencies in R, which is very easy: R...SPAdes-3.6.2-Linux.tar.gz gunzip < SPAdes-3.6.2-Linux.tar.gz | tar xvf - Now, we are ready to go. F...2236 days ago
Comment on "SPAdes hybrid genome assembly"
...he data. SPAdes is a swiss-army knife of genome assembly tools, and by defa...z -2 SRR2627175_2.fastq.gz --nanopore minion.pass.2D.fastq...asta samtools faidx SPAdes_hybrid/contigs.fasta NODE_1_length_4620446_cov_135.16...2236 days ago
2237 days ago
Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultra...mapping and (ii) assembly. Designed for long, noisy reads, they do not have a...ssemblies are contiguous (i.e. long) but very noisy (i.e. full of errors) We...2237 days ago
Comment on "List of genome announcement, notes and reporting journals"
Genomics data also accept draft genome assembly papers https://www.sciencedirect.com/journal/genomics-data2244 days ago
2264 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Install cpanm to make installing other modules easier (you'll thank us later). You need to type these commands into a Terminal emulator (Mac OS X, Win32, Linux) cpan App::cpanminus Now install any module you can find. cpanm Module::Name2280 days ago