Tools and Method for Haplotype phasing !
...ge contained in these results, however, is best exploited through phased haplotypes, which classify th...romosome. Since sequence and SNP array data normally take the form of unphased genotypes, one does not speci...1381 days ago
WhatsHap: fast and accurate read-based phasing
...sed Phasing of Related Individuals). WhatsHap is easy to install It is easy to use: Pass in a VCF and one or more BAM files, get out a phased VCF. Supports multi-sample VC...2212 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...issue for downstream analysis whether you're working on the haploid or phased-diploid assembly. Identify p...id assembly (i.e. Canu, FALCON or FALCON-Unzip primary contigs) or on a phased-diploid assembly (i.e. FALCON...2009 days ago
Phased Human Genome Assembly !
...sembler, maternal and paternal haplotypes were resolved over more than 80% of the genome. Maternal and paternal haplotype blocks were then further phased using Hi-C technology and the...2079 days ago