3963 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools used for bench-marking. We f...1164 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...With our new approach we have reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg24.github....1164 days ago
Taverna Workflow Management System
...source domain independent Workflow Management System – a suite of tools used to design and execute s...ote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of work...3934 days ago
PLOS Computational Biology: Translational Bioinformatics educational resources
...es: “Translational Bioinformatics”. This collection is presented as an online “book” which could serve as a reference tool for a graduate level introduc...3933 days ago
Next Generation Sequencing (NGS) Tutorials
...eration DNA sequencing data PubMed: 21478889 SNiPlay: a web-based tool for detection, management and...quencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis h...3505 days ago
Latest paper on comparison of mapping tools
...dag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):1...//bioinformatics.oxfordjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http://researc...3915 days ago
Bioinformatics software for biologists in the genomics era
...ion of the fundamental paradigms under which biologist-friendly software tools are designed and developed t...o take precedence over the current supposition that biologists should re-tool and become programmers when a...3805 days ago
3681 days ago
Ten recommendations for creating usable bioinformatics command line software
...ies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present...3637 days ago