2790 days ago
2778 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural variants...oints within reads increases mapping and alignment complexity. We describe an algorithm...2742 days ago
2014 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and t...2727 days ago
2702 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein,...ng hundreds or even thousands of sequences using a randomized inference algorithm...2688 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchaine...aximally scoring chains of ordered gene pairs are computed and reported. This algorithm...2677 days ago
2660 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using...S scaffolders using Illumina paired reads of three bacterial genomes. Our algorithm...2582 days ago