Results for "Mate"
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...g process. Specifically, we have explored the use of optical mapping and mate-pair data to augment assembli...ple maps, contig graphs and scaffolds. Augmenting assemblies with mate-pair dataMate-pair informatio...2596 days ago
Omega2: metagenome assembly pipeline
...ming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then merged to contigs and scaffolds using mate-pair information. In comparis...2545 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
...rogram could utilize Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provides another practical alternative to existing mate-pair_based approaches or othe...2121 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
...ally detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will...readthedocs.io/en/latest/tutorial.html nxrepair aligned_matepairs.bam assemblyfasta.fasta...1982 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
...lations—the latter of which can include selection, recombination, and demographic fluctuations. jackalope can simulate single, paired-end, or mate-pair Illumina reads, as well...1799 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...e-end data sets -1 seq_files_left: comma separated files for the first mate in the paried-end data sets -2 seq_files_right: comma separated files for the second mate in the paired-end data sets...1605 days ago
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