Entrez Direct: E-utilities on the UNIX Command Line
...xpression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieva...2798 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...ription MeGAMerge is a perl based wrapper/tool that can accept any number of sequence (FASTA) files containing assembled contigs of any length in Multi-FASTA format to produce an im...2737 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...as 10x, inDrops, and Dropseq. Customize workflows for new technologies and protocols. Process feature barcoding data such as CITE-seq, REAP-seq, MULTI-seq, Clicktags, and Perturb-s...1169 days ago
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GroopM: Metagenomic binning toolset
...nning toolset. It leverages spatio-temoraldynamics (differential coverage) to accurately (and almost automatically)extract population genomes from multi-sample metagenomic datasets....2659 days ago
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NCBI Prokaryotic Genome Annotation Pipeline
...Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level process that includes p...2589 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full potential with multi-library Illumina-based projec...2586 days ago