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...NEWISE will be used to annotate the sequence. Both search by signal, content and homology (protein and cDNA sequences) methods will be employed in order to improve the ab initio resu...2852 days ago
- ...ash; if exceeded, rows and columns are limited to 75. If you are using order, size and color rows/columns in combination they must appear in that order. Need help? Post questions...
2845 days ago
OPERA : Optimal Paired-End Read Assembler
...bler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/long reads to order and orient the intermediate c...2838 days ago
- ...ed for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts that wrap and connect bioinformatics tools in order to extract target sequences f...
2782 days ago
CISA: Contig Integrator for Sequence Assembly
..., no individual assembler guarantees the optimal assembly for diverse species. Optimizing various parameters in an assembler is often performed in order to generate the most optimal...2741 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...t aims to improve de novo assembly in the presence of a closely related reference. The idea is to combine de novo and reference-guided assembly in order to obtain enhanced results.2737 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or more assemblies in order to enhance contiguity and correctness of both. GAM-...2737 days ago
- pyScaf orders contigs from genome assemblies utilising several types of information: pa...e-based mode, pyScaf uses synteny to the genome of closely related species in order to order contigs and estimate...
2737 days ago
- ...ubmodule update --init make It is also convenient to add the location of progressiveCactus/bin to your PATH environment variable. In order to run the included tools (ex...
2708 days ago
Many-Core Engine (MCE) for Perl example
...collection of sugar methods and output iterators for preserving output order. MCE::Mutex Provides a simp...hreads. MCE::Relay Enables workers to receive and pass on information orderly with zero involvement by th...2694 days ago
