Results for "PhD Program"
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PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing...2978 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2979 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RN...ping). The MIRA acronym stands for Mimicking Intelligent Read Assembly and the program pretty well does what its acr...
2979 days ago
- This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genom...
2942 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and ori...2942 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align re...2935 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEM...posed a number of integrated modules. These modules can be executed as a single program to generate a complete analys...
2910 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students t...ssing Workflow. In Linux, we use a shell that is a program that takes your commands from...Hell (bash), but there are several additional shell programs on a typical Linux system su...2902 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels...genomic DNA sequences. Previous programs designed for this task have...use faster abundance estimation programs, which only classify small s...r than the abundance estimation program MetaPhlAn. Kraken is availabl...2897 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy by com...
2897 days ago
