2842 days ago
2761 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...e become even more difficult, de novo assembly being on top of this list. Despite efforts to design tools able to assemble, de novo, an organism sequenced with short reads, the results...2737 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to...2707 days ago
YASRA: Reference based assembler
...hort Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference g...2665 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algorithm...2589 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...ints in the human lineage confirms certain published observations but disagrees with others. Although only a few mammalian genomes are currently sequenced to high precision, our theore...2587 days ago
2585 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
...a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencin...2582 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...cide between alternative sequencing methods for a sequence-based project, e.g. should the library be paired-end or not, how many reads should be sequenced.2581 days ago