HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
...thon notebook to reproduce results in the paper can be found in this repository. HINGE is an OLC(Overlap-Layout-Consensus) assembler. The idea of the pipeline is shown belo...2294 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
...interactive network graphs with JavaScript. The d3Network package makes it easy to create these network graphs from R. The main idea is that you should able to ta...2236 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
...ipts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment ...1960 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
...for computationally-costly dynamic programming algorithms. The first key idea of our proposed pre-alignment...l common subsequences shared between two given sequences. The second key idea is to design a hardware accel...1659 days ago
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