Results for "mouse model"
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ART is a set of simulation tools to generate synthetic ne...icking real sequencing process with empirical error models or quality profiles summariz...T can also simulate reads using user own read error model or quality profiles. ART supp...2792 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and th...d, MCE follows a bank queuing model. Imagine the line being the d...el workers. MCE enhances that model by adding the ability to chun...process while running. MCE MODELS The models take Many-Core E...l control when utilizing this model. MCE::Flow is similar to MCE:...2703 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE versio...the results of ADMIXTURE and STRUCTURE-like mixture models. RADpainter, finestructure and ChromoPainter for RAD tag data used for non-model organisms. Scripts to perfor...2689 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as bein...dd data to the figure, and providing information for specific data points using mouse...
2685 days ago
- This website and accompaning documents are intended as a tool to help researchers dealing with non-model organisms acquire and process...
2641 days ago
- High throughput sequencing (HTS) technologi...biology. However, the analyses of non-model organisms, for which little p...eeded for HTS, and how to analyze non-model species using HTS. The course...approaches specifically targeting non-model organisms.
2639 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM...tial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of e...2625 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for s...ssemblies to alignment of large syntenic genomic regions and whole genome human/mouse...2590 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled structures are prone to con...le proteins, which utilizes a coarse-grained energy model. The overall quality is calcu...2558 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction a...of non-coding RNAs. It uses SVM-based model for the discrimination betwee...NAs and RandomForest-based prediction model for the classification of ncR...sed for the development of prediction model. The standalone version...2536 days ago
