2785 days ago
Comparative genomics educational material and papers bookmarks
...lved with an average rate of ~2.1 large-scale rearrangements per million years after the divergence from a common cetartiodactyl ancestor ~60 Myr ago2. This rate compares to...2784 days ago
Standardized velvet assembly report
.... Edit permute.sh to your liking, paying particular attention to the kmer, cvCut, expCov, and other flags To Run: perl fastaAllSize mysequences.fa > mysequences.stat or gunzip -c my...2754 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requi...ore at https://sourceforge.net/projects/sb2nhri/files/MyPro/2748 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packa...2744 days ago
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