Results for "nucleotide"
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TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing tec...2613 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warning! This softw...2641 days ago
- SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation sequencing (NGS) single-nucleotide polymorphism (SNP) variant data. SNP reports (acc...
2616 days ago
- FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence lett...
2583 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g... (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain...t weak, phylogenetic signals. Even though tetra-nucleotide analysis (TNA) utilizes the i...
2582 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different pieces of DNA....2500 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...ically a branch and bound approach which starts branch expansion in a greedy way taking the symbols from the given pair of sequences (protein or nucleotide) and results in an optimal al...2363 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...mprove the structural accuracy of the resulting sequence. The package also includes a polisher module, which produces the final assembly of high nucleotide-level quality.2216 days ago
BEAP: Blast Extension and Assembly Program
...ram (BEAP) is a computer program that uses a short starting DNA fragment, often a EST or partial gene segment, as "primer", to recursively blast nucleotide databases in an attempt to ob...2179 days ago
Many-to-many pairwise alignments of two sequence sets
...optimum, by exploring all possible alignments and choosing the best. A scoring matrix is read that contains values for every possible residue or nucleotide match. Needleall finds the al...2171 days ago
