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Maq: Mapping and Assembly with Quality
...tp://sourceforge.net/projects/maq/. Maq is previously known as mapass2. Run Maq Now Follow these steps t....dat is contained in maq-data. View the alignment: cd maqdemo/easyrun; maqindex -i -c consensus.cn...2773 days ago
Standardized velvet assembly report
...ng BLAST, add blastall and formatdb. Edit permute.sh to your liking, paying particular attention to the kmer, cvCut, expCov, and other flags To Run: perl fastaAllSize myseque...2756 days ago
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2746 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is...p Length, Identity, etc) are user-declarable at runtime. It is written to run on...to $binpath in the tool: Newbler (specifically runAssembly)Minimus2 (part of AMO...2746 days ago