Results for "AP"
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...WiseScaffolder is a stand-alone semi-automatic application for genome scaffoldi...e-pair data. It also produces editable scaffold maps, allowing either to build ga...n scaffolds buildfasta converts the scaffold(s) map(s) into Fasta sequences.2911 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehe...e interactive tools you need in one application. Taxonomic analys...charts, word clouds, Voronoi tree maps and many other charts PCoA,...lable through menus, toolbars and graphics. No scripting skills requ...
2899 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2897 days ago
- ...ion using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The methods are adaptive and support heterogeneous...
2856 days ago
- ...shorter than around 80nt, or reads where the base qualities are low in all or most reads before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different...
2875 days ago
TARDIS: Toolkit for automated and rapid discovery of structural variants
tardis Toolkit for Automated and Rapid DIscovery of Structural variants Requirements zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (included a...2580 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated...2685 days ago
- CrossMap is a program for convenient conversion of genome co...g SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is designed to liftover genom...genome. We do not recommend using CrossMap to convert genome coordinates...
2857 days ago
- ...eference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny. Home Page: http://sourceforge.net/apps/mediawiki/amos/index.php?ti...
2877 days ago
- ...edicated to convert genetic information stored in GenBank entries to graphical maps. The input text file has to...at, whereas the output format can be chosen among several formats. The application is especially optimi...
2877 days ago
