CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...tics, and is currently implemented in all free and commercial bioinformatics packages. However, with the advent of Next Generation Sequencing (NGS) and the development of new sequencing techniques, the utility of tr...2504 days ago
2503 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic annotation...the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researcher...2501 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often.... However, there is enough information in the reads to correct most of the sequencing errors, thus making subsequen...2398 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxo...2383 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (...seeds, and outputs a graph and scaffold structures. Tulipbulb adds long read sequencing data to these. https...2383 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB por...ze, summarize and visualize MinION nanopore sequencing data. As a package for R, poR...2383 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced b...he statistics that we think will be useful for this task. However, nanopore sequencing is an emerging and rapidly de...2383 days ago
coursera genome assembly tutorial
Solutions to Coursera Genome Sequencing (Bioinformatics II)2381 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wik...d or long reads to optimally order and orient contigs assembled from shotgun-sequencing reads.An updated version call...2379 days ago