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  • TULIP - The Uncorrected Long read Itegration Pipeline

TULIP - The Uncorrected Long read Itegration Pipeline

https://github.com/Generade-nl/TULIP

#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (European eel)

TULIP currently consists of to Perl scripts, tulipseed.perl and tulipbulb.perl. These are very much intended as prototypes, and additional components and/or implementations are likely to follow. 
Tulipseed takes as input alignments files of long reads to sparse short seeds, and outputs a graph and scaffold structures. Tulipbulb adds long read sequencing data to these.

 

https://github.com/Generade-nl/TULIP