ARCS: scaffolding genome drafts with linked reads
ARCS, an application that utilizes the barcoding information contained in linked reads to further organize draft genomes into highly contiguous assembl...ility in harnessing the barcoding information contained in linked read data...2307 days ago
2263 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively al...o quickly and correctly align the reads, including those spanning (c...proximate mapping locations for a read and then a banded Smith-Water...search helps to detect and split reads that...2257 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and...2248 days ago
2248 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how to use the MITObim pipeline described in Hahn e...Obim supports in principle also data from the Iontorrent, 454 and PacBio&nbs...2244 days ago
Porechop: tool for finding and removing adapters from Oxford Nanopore reads
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Por...2223 days ago
2221 days ago
EAGLER: a scaffolding tool for long reads.
EAGLER is a scaffolding tool for long reads. The scaffolder takes as input a draft genom...reated by any NGS assembler and a set of long reads. The long reads are used to...oin overlapping contigs. EAGLER supports both PacBio and Oxford Nanopore reads. Th...2217 days ago
2216 days ago