Results for "Sequencing Data Analysis"
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Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innova...then compared the method to existing HGT detection tools using a larger strain data set...2902 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experie...in itself and is used more often to manipulate NGS data as compared to the other command...2902 days ago
- ...ools, next-gen, next-generation, sequencing, bowtie, sam, bam, primer, tu...used in next-generation sequence analysis. This primer provides an...new to next-generation sequence analysis. The primer is also designed..., and no other tools, and sample data sets are provided. Terms in bold...
2901 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It...morphisms, and simulate reads with uniform substitution sequencing errors. It does not generate INDEL sequenci...
2901 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you...curate results, A5-miseq requires Illumina data with certain characteristics....sembler if a tool like FastQC reports your data qua...
2845 days ago
- Recent studies of the human genome have...y elements. These interaction datasets are important resources t...logies, making sense of these datasets demands integrative and e...ork theory approaches for the analysis of chromatin interaction...onal genomics and interaction datasets, 3) querying network componen...
2897 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. P...bundance estimation programs, which only classify small subsets of metagenomic data. Us...2897 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is direc...by comparing it to a reference database containing microbial and...et of the non-redundant protein database nr used by NCBI BLAST, op..., only 10 GB RAM with a protein database...
2897 days ago
- CSBB is a command line based bioinformat...s suite to analyze biological data acquired through varied avenu...ted by performing down-stream analysis tasks while eliminating t...e normalization on expression data or convert genome wide gene e...res when comparing expression data from different platforms. More a...
2895 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 1...r browsing, blasting, probing, and downloading. The data and tools presented by greeng...user, you can use greengenes to keep your own local database...
2895 days ago
