Results for "genome structure"
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GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "b...n attempt to produce a realistic assessment of genome assembly software in a rapidl...of GAGE have now been published in the journal Genome Re...2849 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications.... Users can interact with the genome using a powerful pan-and-zoom...e-write of CGView, a circular genome viewer written by Paul Stotha...2837 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genomes;...2826 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (w...
2826 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for n...le haploid or diploid pairs of incompatible loci can be spread throughout the genome an...2825 days ago
- The accurate description and annotation of structural variants can be complex. This is due to the different...positions. Furthermore, multiple rearrangements in a single area of the genome ca...
2825 days ago
- Development of cancer is driven by somatic alterations, including numerical and structu...berrations (CNAs) of chromosomal segments in tumor genomes. However, there is lack of c...location of chromosomal CNA-associated breaks by a genome-wi...
2206 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of...lexa-reads, map them flexibly to several reference genomes using one of four different...ut is furthermore compatible with software such as genome br...
2822 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized environmen...ies. One of the main challenges in analyzing a metagenome is phylogenetic classificatio.... Such classification is a useful prerequisite for genome as...
2816 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessi...f interconnected databases (publication, sequence, structure, gene, variation, expression,...nt summaries or other results that are returned in structured XML format. This can elimina...2807 days ago
