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CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequen...(CLA). The CLA pipeline can scaffold reference-sorted contigs based on paired reads,...2600 days ago
2600 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It i...that enables errors in the consensus sequence to be corrected by iteratively mapping reads to the current assembly. An imp...2593 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a cr...rgasso Sea in 2004 and Global Ocean Sampling in 2007). It was first to combine reads f...2590 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of tho...he available human genome sequence data. The precision is further increased by mapping inversions as small as 31 bp....2587 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 se...cted errors. Furthermore, we show that the quality of assemblies improves when reads a...2586 days ago
2585 days ago