Tags: Bioinformatics, Assembly, HGA, NGS
2761 days ago
Tags: Bioinformatics, Assembly, Scaffoldings, NGS, SWALO
2760 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Minia, NGS, de Bruijn
2752 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, SGA, NGS
2752 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX) ggplot2 (from R prompt type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments against a reference genome). If using BLAT, ad...Tags: Bioinformatics, Analysis, Assembly, Genome, Velvet, standardized-velvet-assembly-report
2751 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Velvet, NGS, Tutorial
2751 days ago
Tags: Bioinformatics, Analysis, Assembly, NGS, Cutadapt
2746 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-science-tutorials/greedy-is-good/ This webpage is also useful for the same: http://learninglover.com/examples.php?id=59 http://www.cs.rpi.edu/~magdon/ps/conference/super_biokdd.pdf https://ocw.mit....Tags: Bioinformatics, Assembly, Greedy, Genome, NGS
2748 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, NGS, ScaffMatch, Scaffoldings
2747 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse species. Optimizing various parameters in an assembler is often performed in order to generate the most optimal assembly. Howev...Tags: Bioinformatics, CISA, Assembly, Genome, Merger, Merge, CrossCompare
2745 days ago