Results for "Genome Biology"
Bookmarks
The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational...ter Institute (JCVI) and the Institute for Genome Sciences (IGS) at the Univers...research projects that involve comparative genome...2854 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "ba...an attempt to produce a realistic assessment of genome assembly software in a rapidl...of GAGE have now been published in the journal Genome...2853 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications.... Users can interact with the genome using a powerful pan-and-zoom...e-write of CGView, a circular genome viewer written by Paul Stotha...2841 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The applicatio...and read coverage can be displayed for draft genomes...2830 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome...
2830 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for ne...ple haploid or diploid pairs of incompatible loci can be spread throughout the genome...2829 days ago
- The accurate description and annotation of structural variants can be complex. This is due to the different r...r positions. Furthermore, multiple rearrangements in a single area of the genome...
2829 days ago
- Development of cancer is driven by somatic alterations, including numerical and structu...berrations (CNAs) of chromosomal segments in tumor genomes. However, there is lack of c...location of chromosomal CNA-associated breaks by a genome-...
2210 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of...lexa-reads, map them flexibly to several reference genomes using one of four different...ut is furthermore compatible with software such as genome...
2826 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized environmen...ies. One of the main challenges in analyzing a metagenome is phylogenetic classificatio.... Such classification is a useful prerequisite for genome...
2820 days ago
