Mesquite: A modular system for evolutionary analysis
...s, while others do non-phylogenetic multivariate analysis. Because it is modular, the analyses available depend on the modules installed. https://github.com/MesquiteProject/MesquiteC...2303 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
.... It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed. The MMseqs2 user guide is available as Github Wiki or as PDF file...2294 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
Mike Bostock’s D3.js is great for creating interactive network graphs with JavaScript. The d3Network package makes it easy to create...2279 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
...ignment of contigs in the output scaffolding to contigs in the reference scaffolding in the sense of the number of correct links. https://github.com/mandricigor/repeat-aware2295 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012-2014) Metagenomics Workshop 201...2268 days ago
2266 days ago
D3 javascript for visualization !
Welcome to the D3 gallery! More examples are available on bl.ocks.org/mbostock. If you want to share an example and don't have your own hosting, consider using Gist and bl.ocks.org. If you want to share or view live examples try vida.io.2262 days ago
MITObim - mitochondrial baiting and iterative mapping
This document contains instructions on how to use the MITObim pipeline described in Hahn et al. 2013. The full article can be found here. Kindly cite the article i...2247 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
...(thanks Roman Cheplyaka for the interview). It is available at both the bioinformatics chat and iTunes. https://github.com/Kingsford-Group/scallop...2247 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and sex-linked genes (genes located...2225 days ago