Results for "NGS data analysis"
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Most variant calling pipelines result in files containing large quantities of variant...cf) is an increasingly popular format for this data. The format of these files an...eir content is discussed in the vignette ‘vcf data.&rs...2844 days ago
- Recent technological progress has greatly facilitated de novo genome sequ...irming and improving the quality of such assemblies is critical for subsequent analysis. Visualization and qua...
2839 days ago
Sushi: An R/Bioconductor package for visualizing genomic data
Sushi: An R/Bioconductor package for visualizing genomic data2831 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a...ge of species. GeneMark-ET is a gene prediction tool that incorporates RNA-Seq data int...
1978 days ago
- Before uploading a data file, check the samples gallery to make sure that your data format is compatible. Your file must be plain text. Your data val...
2829 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mamm...ayout-consensus paradigm and uses the FM-DNA-index (FMD-index) as the key data str...
2823 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large volume of next-generation sequencing (NGS) data. NGS tech...
2826 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational database. It was developed by the...rch projects that involve comparative genome analysis. The following sections provi...
2825 days ago
- VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a num...quality of different assemblies. For comparing multiple assemblies of the same data-set...
2810 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can d...h a focus on handling genome assembly data. The application is available...e and other sequences as concentric rings. BRIG will perform all BLAST...mes or even raw, unassembled sequence data. B...2801 days ago
