2980 days ago
3020 days ago
RNA-Seq De novo Assembly Using Trinity
...University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruc...Trinity combines three independent software modules: Inchworm, C...n processes each graph independently to extract full-length spli...ch cluster. Each cluster represents the full transcriptonal comp...3017 days ago
2980 days ago
PhyloGrapher - Graph Visualization Tool
...onary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements. In general, it is possible...3003 days ago
3003 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome informat...3003 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read mer...overlaps and without requiring the target fragment size as input. In addition, i...results. Together with a highly optimized implementation, it can merge millions o...3003 days ago
QUAST: quality assessment tool for genome assemblies
...cepts multiple assemblies, thus is suitable for comparison. More at http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjournals.org/content/early/2013/03/09/bioinformati...3003 days ago
REAPR: a universal tool for genome assembly evaluation
...software requires as input an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size dist...3003 days ago