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...formation stored in GenBank entries to graphical maps. The input text file has to be in GenBank flat file format, whereas the output format can be chosen among several formats. The...2871 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2869 days ago
- Most variant calling pipelines result in files containin...ta.’ These files are typically intended to be post-processed (i.e., filtered) as an attempt to remove false positives or otherwise problemati...
2868 days ago
- ...ds of scaffolds instead of small numbers of chromosomes. Confirming and improving...n the paper:Riba-Grognuz, Keller, Falquet, Xenarios & Wurm (2011) Visualizati...ndalone BLAT v. 32×1). Source Binaries .Cytoscape (tested with versions 2.7...
2863 days ago
GeneValidator - Identify problems with predicted genes
...evalidator.sbcs.qmul.ac.uk. If you use GeneValidator in your work, please cite us as follows: Dragan M‡, Moghul MI‡, Priyam A, Bustos C & Wurm Y. 2016. GeneVal...2861 days ago
- ...ods will be employed in order to improve the ab initio results. Weak conservation of Start codons will lead to wrong prediction of initial exons in most cases. http://genome.crg.es...
2861 days ago
- ...is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-art performance across a wide range of species. Gen...
2003 days ago
- ...;than the input contigs. In addition, Redundans will automatically close the gaps resulting from...ining of genome fragments using paired-end and/or mate-pairs reads gap closing Redundans is: fast&n...
2855 days ago
- ...are limited to 75. If you are using order, size and color rows/columns in combination they must appear in that order. Need help? Post questions to the Circos Google Group. http://mkweb.b...
2854 days ago
- ...equencing and assembly were handled by dedicated sequencing facilities, of which only a few existed around the globe. Naturally, the capacities at those sequencing facilities were s...
2851 days ago
