Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...sequence libraries based on DNA, RNA or proteic reference sequence...nd amplicon datasets from current sequencing technologies such as S...hypothesis, e.g. with or without sequencing errors, or with low or high c...e used to help decide between alternative sequencing methods for a sequenc...2587 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262571 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...ion across different error profiles, rates and sequencing technologies even with... Transcriptome mapping through internal construction of a transcript...nt of a new spliced-alignment mode for mapping RNA-seq reads is under way.Description o...2573 days ago
2555 days ago
GeneProf: analysis of high-throughput sequencing experiment
...roduced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen ana...f ChIP-seq and RNA-seq data in one place, plus sup...from GeneProf may be used externally (cp. Section 'Web API: Retri...2545 days ago
2540 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing t...ioinformatics packages. However, with the advent of Next Generation Sequencing (NGS) and the development of new sequencing techniques, the utility of tr...2525 days ago
2524 days ago
Web Apollo: a web-based genomic annotation editing platform
Web Apollo is the first instantaneous, collaborative genomic anno...f the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researcher...2522 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often.... However, there is enough information in the reads to correct most of the sequencing errors, thus making subsequen...2419 days ago