Results for "Sequence analysis."
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Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds a...by mapping short reads to reference sequences. Maq is a project hosted by&...try Maq. All you need is a reference sequence file in the FASTA format....Simulate diploid reference and read sequences...2765 days ago
- Background. Next-generation sequencing technologies are now producing multiple times the...esulting contigs to generate a modified reference sequence. In this way, it can very qui...sequencing cost, generate new, modified reference sequence...
2762 days ago
- Spines is a collection of software tools, developed and used by the Ve...nt data manipulation (mostly genomic sequences, alignments, variation etc.)...ous analyses. It also features three sequence alignment packages: Sats...sensitive local aligner for diverged sequences...
2759 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify CNVs. EXCAVATOR2 enhances the identificat...
2757 days ago
- Useful script for NGS analysis.
2757 days ago
- Bipype is a very useful program, which prepare a lot of types of bioinformatics analyses...three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic data...given single-end reads, aligns reads to reference sequence(...
2756 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence...
2749 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing r...tasks by finding the adapter or primer sequences in an error-tolerant way. It...r input data, without removing adapter sequences...
2743 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both state-of-the-art tools for each step as well as...
2747 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse...2742 days ago
