Results for "WA"
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...nces, primers, poly-A tails and other types of unwanted sequence from your high-t...adapter or primer sequences in an error-tolerant way. It can also modify and filt...ds and even colorspace data is supported. If you want, you can also just demultip...2756 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requir...e. It performed better than de novo assemblers and contig integration software. Produces more contiguous a...2755 days ago
GARM:Genome Assembly, Reconciliation and Merging
...mplemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages. The pipeline was tested on Debian, Ubuntu, Fe...2751 days ago
- ...;C. parapsilosis (13 Mb; CANPA) and A. thaliana (119 Mb; ARATH) chromosomes, reconstructing correctly all chromosomes always for CANPA and nearly always for ARATH (Figures in dropb...
2751 days ago
- ...s often have long repetitive regions, and they are hard to assemble using overlap-consensus-layout approach. De Bruijn graph-based assembly approach was originally proposed to handl...
2750 days ago
- ...This is the toolset for generating the synteny correspondences in Plant Genome Duplication Database. It is intended as an easy-to-use and quick way to identify conserved gene a...
2748 days ago
Finding Patterns in Biological Sequences
...uch patterns. Finally we list publicly available tools and databases for pattern discovery. On-line supplement is available through http://genetics.uwaterloo.ca/∼tvinar/cs798g/m...2748 days ago
- ...ailable as webservices, so to get the full power of the MEME Suite you will need to download and install a local copy of the software. To see what has changed re...
2747 days ago
- ...resolved, you can use a softlink as a workaround: ln -s "path with spaces" "installation path without spaces" In the parent directory of where you want Progressive Cactus installe...
2722 days ago
- ...a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best...the query. We show that YAHA detects more breakpoints in less time than BWA-SW across all SV classes, and...
2719 days ago
