2625 days ago
2611 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequenci...asets. CLA is a user friendly tool that requires a single command line input to generate or...2609 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Gr...a critical component of many genome sequencing projects. CABOG operates on s...e the fundamental limitation of all sequencing machines, namely, that they r...reads from first-generation Sanger sequencing machines and second-generatio...2599 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its...2595 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced b...Illumina, Ion Torrent, and Roche 454 sequenci...g technologies and can be applied to single- or mixed-genome data. In additio...g sensitive to low coverage areas of sequencing projects. Using published dat...2595 days ago
2593 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a co...2591 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using di...em, which combines contig order, distance and orientation in a single optimization objective. The resul...2591 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assemb...bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easi...2591 days ago