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  • npScarf: Scaffolding and Completing Assemblies in Real-time Fashion

npScarf: Scaffolding and Completing Assemblies in Real-time Fashion

https://github.com/mdcao/npScarf

npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from mobile elements (plasmids and genomic islands).

Complete paper at https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5321748/