Results for "C"
Bookmarks
flo - same species annotations lift over pipeline Lift over is the process of transferring annotations...r. Usually lift over is done because there is a new, improved...ty annotations (maybe manually curated or experimentally verif...o the new assembly (e.g., as a chain file), transform the coor...3034 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different methods to achieve these mappings. It is al....gov/genome/tools/remap API http://www.ncbi.nlm.nih.gov/genome/tools/re...
3033 days ago
- Although centromeres are essential for life and are the subject of extensive research, centromere locations in yea...ng de novo genome assembly, deconvolution of metagenomic samp...enturion in identifying known centromere locations from high...hat Centurion can be used for centromere identification for a...
3032 days ago
- HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions st...ads up to in-depth analyses. Importantly, HiCdat is focussed on the analysi...of chromosomes, their correlation to genomic and epigenomic features, and...
3032 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various sup...nload, type "uname -a" on the command line to display your ma...software, see http://genome.ucsc.edu/license/. The Blat and...3026 days ago
- ...al assumes no previous knowledge of scripting or programming, yet pr...rapidly toward an intermediate/advanced level of instruction . . ....nual for self-study, and as a reference and source of knowledge on s...e that the only way to really learn scripting is to write scripts....
3026 days ago
- This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, c...a variety of modern file formats, and conversion between file formats...re libraries and related adaptors to access binary file formats inclu...
3025 days ago
- Generic Genome Browser Version 2: A Tutorial for Administra...torial to take you through the main features and gotchas of configuring GBrowse as a server...berkeleydb and MySQL adaptors. More at http://elp.ucdavis.edu/tutorial/tutorial.ht...
3025 days ago
- Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-b...seq, for the purpose of building genetic maps and conducting population genomics...
3019 days ago
